PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000130.1_g00026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 350aa    MW: 38248.2 Da    PI: 10.1216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000130.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05120142223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +Cp Cg+ F  +++L+ H+ + H
  Itr_sc000130.1_g00026.1 120 SCPVCGQIFMKPDTLELHQAVrH 142
                              8******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280119142IPR007087Zinc finger, C2H2
SuperFamilySSF563995.18E-21144349No hitNo description
Gene3DG3DSA:3.90.228.101.0E-14146348IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAINKNSKKN PKPQTRSHHL HKPHSWAVVR SLFTCKHLEQ PKEQRHNRKP KQSQEISKKM  60
GPQHPSFSSS SSPASPNSSI VGSLRAMPFR KLSGCYECRM VVDPVLGLTR DPSLRTTICS  120
CPVCGQIFMK PDTLELHQAV RHAVSELGAE DTSRNVVEII FQSSWLKKHN PICTIDRILK  180
VHNTPKVISR FEEYRDAIKA KANKLPKKHP RCVADGNELL RFHSTTFMCS LGLNGSSNLC  240
NSIPSCAVCG IIKNGFKGAG DVAGKGVLTT ATSWKAHVSG GAAGEEKRAM LVCRVIAGRV  300
KKSLQGSLEE YDSVSGGAGA GAGGYGDLEE LYVFNPKAVL PCFVVIYRGF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434130.11e-149hypothetical protein CICLE_v10001224mg
TrEMBLV4T7C61e-149V4T7C6_9R
STRINGVIT_18s0001g03670.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107231517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.17e-92C2H2-like zinc finger protein